Software

EPIDEMIC: Epidemiology Educational Code is an easy-to-run educational Matlab toolkit for epidemiological analysis, which offers functionalities for modeling an epidemic, monitoring its progress, and forecasting the underlying numbers of interest. This code is, first of all, an educational tool for researchers and students who are interested in computational epidemiology. The programs and tutorials are designed to offer good introductory material for beginners in the field.

http://www.epidemiccode.org

PaSR-SDE: Premixed Turbulent Combustion with Stochastic Mixing Models Simulator is a Matlab code to simulate premixed turbulent combustion in a partially stirred reactor using stochastic micro-mixing models.

https://americocunhajr.github.io/PaSR-SDE

CE-ABC: Cross-Entropy Approximate Bayesian Computation is a Matlab package that implements a framework for uncertainty quantification in mechanistic epidemic models defined by ordinary differential equations, which combines the cross-entropy method for optimization and approximate Bayesian computation for statistical inference.

https://americocunhajr.github.io/CE-ABC

ElectroM: ElectroMechanical Dynamic Code is an easy-to-run code to simulate the nonlinear dynamics of an electromechanical system.

https://americocunhajr.github.io/ElectroM

epidWaves: A code for fitting multi-wave epidemic models is a Matlab/Python package to fit multi-wave statistical models to the complex epidemic data. It is based on a parametric statistical framework that combines surveillance data, nonlinear regression, and information criteria to obtain a statistical model capable of describing multi-wave epidemic outbreaks.

https://americocunhajr.github.io/epidWaves

ARBO: Arbovirus Modeling and Uncertainty Quantification Toolbox is a package for simulation and analysis of arbovirus nonlinear dynamics.

https://americocunhajr.github.io/ARBO

CRFlowLib - Chemically Reacting Flow Library is a collection of computational libraries with routines to simulate chemically reacting flows employing In Situ Adaptive Tabulation (ISAT) algorithm for thermochemistry calculation.

https://americocunhajr.github.io/CRFlowLib

STONEHENGE - Suite for Nonlinear Analysis of Energy Harvesting Systems is an ensemble of easy-to-run codes for nonlinear dynamic analysis of vibration energy harvesting systems. It encompasses several tools to simulate, control and visualize their dynamics, and provides a broad and robust framework for numerical experimentation.

https://americocunhajr.github.io/STONEHENGE

MaxEnt: Maximum Entropy Code is an easy-to-run Matlab code for the calculation of the maximum entropy distributions and the corresponding statistical samples from a given set of known information. 

https://americocunhajr.github.io/MaxEnt

HarvesterOpt: Harvester Optimizer is an easy-to-run code to solve an optimization problem to maximize the energy recovered by a bistable piezo-magneto-elastic energy harvesting system.

https://americocunhajr.github.io/HarvesterOpt

SoBioS: Sobol’ Indices for Biological Systems is an easy-to-run Matlab code used for Sobol’ indices-based global sensitivity analysis of Biological Systems.

https://americocunhajr.github.io/SoBioS

ELEVEN: Elevator Brake Optimization and UQ is an easy-to-run code for robust optimization and uncertainty quantification of an elevator brake system.

https://americocunhajr.github.io/ELEVEN

ORCHARD: Orchard Sprayer Tower Dynamics is an easy-to-run code for simulation of the nonlinear stochastic dynamics of an orchard sprayer tower. 

https://americocunhajr.github.io/ORCHARD

RandBar: Random Dynamics of a Bar System is an easy-to-run code to simulate the nonlinear stochastic dynamics of a bar structural system with attached discrete elements.

https://americocunhajr.github.io/RandBar

McCloud: Monte Carlo Cloud Service Framework provides a generic service implementation of Monte Carlo method, based on Microsoft Windows Azure, to solve a wide range of scientific and engineering problems.

https://americocunhajr.github.io/McCloud